2023
1. Aguilar Díaz de León JS, Cruz Villarreal J, Kapuruge EP, Borges CR.: Glycan node profiling of soluble and membrane glycoproteins in whole cell lysates. Anal Biochem 680: 115317, 2023. doi: 10.1016/j.ab.2023.115317 Request a Copy
2. Pendiuk Goncalves J, Walker SA, Aguilar Díaz de León JS, Yang Y, Davidovich I, Busatto S, Sarkaria J, Talmon Y, Borges CR**, Wolfram J**: Glycan Node Analysis Detects Varying Glycosaminoglycan Levels in Melanoma-Derived Extracellular Vesicles. Int J Mol Sci 24(10): 8506, 2023. doi: 10.3390/ijms24108506 Download a Copy
** Corresponding Authors
3. Jehanathan N*, Kapuruge EP*, Rogers SP, Williams S, Chung Y, Borges CR: Oxidized LDL is stable in human serum under extended thawed-state conditions ranging from -20 ℃ to room temperature. J Mass Spectrom Adv Clin Lab 27:18-23, 2023. Download a Copy
*Authors contributed equally.
2022
1. Kapuruge EP*, Jehanathan N*, Rogers SP, Williams S, Chung Y, Borges CR: Tracking the Stability of Clinically Relevant Blood Plasma Proteins with Delta-S-Cys-Albumin-A Dilute-and-Shoot LC/MS-Based Marker of Specimen Exposure to Thawed Conditions. Mol Cell Proteomics 21(11):100420, 2022. Download a Copy
*Authors contributed equally.
2. Yang M, Walker SA, Aguilar Diaz de Leon JS, Davidovich I, Broad K, Talmon Y, Borges CR**, Wolfram J**: Extracellular vesicle glucose transporter-1 and glycan features in monocyte-endothelial inflammatory interactions. Nanomedicine 42:102515, 2022. Request a Copy
** Corresponding Authors
2021
1. Kratz, M., Zelnick, L.R., Trenchevska, O., Jeffs, J.W., Borges, C.R., Tseng, H.H., Booth, S.L., Kestenbaum, B.R., Utzschneider, K.M., de Boer, I.H.: Relationship between chronic kidney disease, glucose homeostasis, and plasma osteocalcin carboxylation and fragmentation. Journal of Renal Nutrition, 31(3): 248-256, 2021. doi: 10.1053/j.jrn.2020.05.013.
2. Aguilar Díaz de león, J.S. and Borges, C.R.: Glycosylation Profiling of Glycoproteins Secreted from Cultured Cells Using Glycan Node Analysis and GC-MS. Methods in Molecular Biology, 2271: 317-330, 2021. Request a Copy
3. Aguilar Díaz de león, J.S., Glenn, H.L., Knappenberger, M. and Borges, C.R.: Oxidized-Desialylated Low-Density Lipoprotein Inhibits the Antitumor Functions of Lymphokine Activated Killer Cells. Journal of Cancer, 12(16): 4993-5004, 2021. Download a Copy
2020
1. Hu, Y., Mulot, C., Bourreau, C., Martin, D., Laurent-Puig, P., Radoi, L., Radoï L, Guénel P, Borges, C.R.: Biochemically Tracked Variability of Blood Plasma Thawed-State Exposure Times in a Multisite Collection Study. Biopreservation and Biobanking, 18(5): 376-388, 2020. Request a Copy
2. Aguilar Díaz de león, J.S. and Borges, C.R.: Evaluation of Oxidative Stress in Biological Samples Using the Thiobarbituic Acid Reactive Substances Assay. Journal of Visualized Experiments (159), e61122, 2020.
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3. Walker, S.A.*, Aguilar Díaz de león, J.S.*, Bussatto, S., Wurtz, G.A., Zubair, A.C., Borges, C.R.**, Wolfram, J.**: Glycan Node Analysis of Plasma-Derived Extracellular Vesicles. Cells 9: 1946, doi:10.3390/cells9091946, 2020. Download a Copy
*Authors contributed equally. **Corresponding authors
4. Henderson, N.J., Simmons, C.R., Fahmi, N.E., Jeffs, J.W., Borges, C.R., Mills, J.H. Structural Insights into How Protein Environments Tune the Spectroscopic Properties of a Noncanonical Amino Acid Fluorophore. Biochemistry 59: 3401-3410, 2020.
2019
1. Jeffs, J.W., Jehanathan, N., Thibert, S.M.F., Ferdosi, S., Pham, L., Wilson, Z.T., Breburda, C., Borges, C.R. Delta-S-Cys-Albumin: A Lab Test that Quantifies Cumulative Exposure of Archived Human Blood Plasma/Serum Samples to Thawed Conditions. Molecular and Cellular Proteomics 18(10): 2121-2137, 2019.
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2. Hu, Y., Ferdosi, S., Kapuruge, E.P., Aguilar Diaz de Leon, J., Stücker, I, Radoï L, Guénel P, Borges, C.R.: Diagnostic and Prognostic Performance of Blood Plasma Glycan Features in the Women Epidemiology Lung Cancer (WELCA) Study. Journal of Proteome Research 18(11): 3985-3998, 2019.
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2018
1. Ferdosi, S., Rehder, D.S., Maranian, P., Castle, E.P., Ho, T.H., Pass, H.I., Cramer, D.W., Anderson, K.S., Fu, L., Cole, D.E.C., Le, T., Wu, X., Borges, C.R.: Stage Dependence, Cell-Origin Independence and Prognostic Capacity of Serum Glycan Fucosylation, β1-4 Branching, β1-6 Branching and α2-6 Sialylation in Cancer. Journal of Proteome Research 17: 543-558, 2018.
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2. Ferdosi, S., Ho, T.H., Castle, E.P., Stanton, M.L., Borges, C.R.: Behavior of blood plasma glycan features in bladder cancer. PloS One, 13(7):e0201208, 2018.
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3. Chen, H., Ambadapadi, S., Wakefield, D., Bartee, M., Yaron, J.R., Zhang, L., Archer-Hartmann, S.A., Azadi, P., Burgin, M., Borges, C., Zheng, D., Ergle, K., Muppala, V., Morshed, S., Rand, K., Clapp, W., Proudfoot, A., Lucas, A.: Selective Deletion of Heparan Sulfotransferase Enzyme, Ndst1, in Donor Endothelial and Myeloid Precursor Cells Significantly Decreases Acute Allograft Rejection. Scientific Reports 8(1):13433, 2018.
2017
1. Hu, Y. and Borges, C.R.: A spin column-free approach to sodium hydroxide-based glycan permethylation. Analyst 142(15): 2748-2759, 2017.
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2. Jeffs, J.W., Ferdosi, S., Yassine, H.N., Borges, C.R.: Ex vivo instability of glycated albumin: A role for autoxidative glycation. Archives of Biochemistry and Biophysics 629: 36-42, 2017.
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3. Ingram, T., Zuck, J., Borges, C.R., Redig, P., Sweazea, K.: Variations in native protein glycation and plasma antioxidants in several birds of prey. Comparative Biochemistry & Physiology Part B 210: 18-28, 2017.
4. Deb, A., Johnson, W.A., Kline, A.P., Scott, B.J., Meador, L.R., Srinivas, D., Martin-Garcia, J.M., Dorner, K., Borges, C.R., Misra, R., Hogue, B.G., Fromme, P., Mor, T.S.: Bacterial expression, correct membrane targeting and functional folding of the HIV-1 membrane protein Vpu using a periplasmic signal peptide. PLoS One 12(2): e0172529, 2017.
2016
1. Biswas, S., Sen, S., Im, J., Biswas, S., Krstic, P., Ashcroft, B., Borges, C., Zhao, Y., Lindsay, S., Zhang, P.: Universal Readers Based on Hydrogen Bonding or π‑π Stacking for Identification of DNA Nucleotides in Electron Tunnel Junctions. ACS Nano 10(12): 11304-11316, 2016.
2. Im, J., Biswas, S., Liu, H., Zhao, Y., Sen, S., Biswas, S., Ashcroft, B., Borges, C., Wang, X., Lindsay, S., Zhang, P.: Electronic Single Molecule Identification of Carbohydrate Isomers by Recognition Tunneling. Nature Communications 7: 13868, 2016.
3. Zuck, J., Borges, C.R., Braun, E.J., Sweazea, K.L.: Chicken albumin exhibits natural resistance to glycation. Comparative Biochemistry & Physiology Part B 203: 108-114, 2016.
4. Borges, C.R. and Rehder, D.S.: Glycan structure of Gc Protein-derived Macrophage Activating Factor as revealed by mass spectrometry. Archives of Biochemistry & Biophysics 606:167-179, 2016.
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5. Trenchevska O., Yassine, H.N., Borges, C.R., Nelson, R.W., Nedelkov, D.: Development of quantitative mass spectrometric immunoassay for serum amyloid A. Biomarkers, 1-9, 2016.
6. Zaare, S., Aguilar, J., Hu, Y., Ferdosi, S., Borges, C.R.: Glycan Node Analysis: A Bottom-Up Approach to Glycomics. Journal of Visualized Experiments 111:e53961, 2016.
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7. Fu L., Borges C.R., Rehder D.S., Wong B.Y., Williams R., Carpenter T.O., Cole D.E.: Characterization of additional vitamin D binding protein variants. Journal of Steroid Biochemistry and Molecular Biology 159:54-59, 2016.
2015
1. Biswas S., Song W., Borges C.R., Lindsay S., Zhang P.: Click Addition of a DNA Thread to the N-termini of Peptides for Their Translocation through Solid-State Nanopores. ACS Nano 9(10): 9652-9664, 2015.
2. Hanavan, P.D., Borges, C.R., Katchman, B.A., Faigel, D.O., Ho, T.H., Meurice, N., Petit, J.L., Ma, C.-T., Sergienko, E.A., Lake, D.F. Ebselen inhibits QSOX1 enzymatic activity and suppresses invasion of pancreatic and renal cancer cell lines. Oncotarget 6(21): 18418-28, 2015.
3. Ho, T. H., Nateras, R. N., Yan, H., Park, J. G., Jensen, S., Borges, C., Lee, J. H., Champion, M. D., Tibes, R., Bryce, A. H., Carballido, E. M., Todd, M. A., Joseph, R. W., Wong, W. W., Parker, A. S., Stanton, M. L., Castle, E. P. A Multidisciplinary Biospecimen Bank of Renal Cell Carcinomas Compatible with Discovery Platforms at Mayo Clinic, Scottsdale, Arizona. PloS One 10(7):e0132831, 2015.
4. Rehder, D.S., Gundberg, C.M., Booth, S.L., Borges, C.R. Gamma-Carboxylation and Fragmentation of Osteocalcin in Human Serum Defined by Mass Spectrometry. Molecular and Cellular Proteomics 14(6): 1546-1555, 2015.
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5. Yassine, H.N., Trenchevska, O., He, H., Borges, C.R., Nedelkov, D., Mack, W., Kono, N., Koska, J., Reaven, P.D., Nelson, R.W. Serum Amyloid A Truncations in Type 2 Diabetes Mellitus. PLoS One 10(1):e0115320, 2015.
6. Borges, C.R., Jeffs J.W., Kapuruge E.P.: Impact of Artifactual, Ex Vivo Oxidation on Biochemical Research. In: Oxidative Stress: Diagnostics and Therapy Volume 2. Edited by Hepel M, Andreescu S. Washington, DC: American Chemical Society; Chapter 16, pp. 375-413; 2015.
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2014
1. Sherma N.D., Borges C.R., Trenchevska O., Jarvis J.W., Rehder D.S., Oran P.E., Nelson R.W., Nedelkov D. Mass Spectrometric Immunoassay for the Qualitative and Quantitative Analysis of the Cytokine Macrophage Migration Inhibitory Factor (MIF). Proteome Science 12(1):52, 2014.
2. Borges C.R. and Lake D.F. Oxidative Protein Folding: Nature’s Knotty Challenge. Antioxidants & Redox Signaling 21(3): 392-395, 2014.
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3. Borges C.R., Rehder D.S., Jensen S., Schaab M.R., Sherma N.D., Yassine H., Nikolova B., Breburda C. Elevated Plasma Albumin and Apolipoprotein A-I Oxidation under Suboptimal Specimen Storage Conditions. Molecular and Cellular Proteomics 13(7):1890-1899, 2014.
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4. Zhao, Y., Ashcroft, B., Zhang, P., Liu, H., Sen, S., Song, W., Im, J., Gyarfas, B., Manna, S., Biswas, S., Borges, C., Lindsay, S. Single-molecule spectroscopy of amino acids and peptides by recognition tunneling. Nature Nanotechnology 9(6): 466-473, 2014.
5. Oran P.E., Trenchevska O., Nedelkov D., Borges C.R., Schaab M.R., Rehder D.S., Jarvis J.W., Sherma N.D., Shen L., Krastins B., Lopez M.F., Schwenke D.C., Reaven P.D., Nelson R.W. Parallel workflow for high-throughput (>1,000 samples/day) quantitative analysis of human insulin-like growth factor 1 using mass spectrometric immunoassay. PLoS One 9(3): e92801, 2014.
6. Borges C.R., Sherma N.D. Techniques for the Analysis of Cysteine Sulfhydryls and Oxidative Protein Folding. Antioxidants & Redox Signaling, 21(3): 511-531, 2014.
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7. Yassine H.N., Jackson A.M., Borges C.R., Billheimer D., Koh H., Smith D., Reaven P., Lau S.S., Borchers C.H. The application of multiple reaction monitoring and multi-analyte profiling to HDL proteins. Lipids in Health and Disease 13(1): 8, 2014.
2013
1. Yassine, H., Borges, C.R., Schaab, M.R., Billheimer, D., Stump, C., Reaven, P., Lau, S.S., Nelson, R.W. Mass Spectrometric Immunoassay and Multiple Reaction Monitoring as Targeted MS-based Quantitative Approaches in Biomarker Development: Potential Applications to Cardiovascular Disease and Diabetes. Proteomics ‑ Clinical Applications 7(7-8): 528-540, 2013.
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2. Borges, C.R., Rehder, D.S., Boffetta, P. Multiplexed surrogate analysis of glycotransferase activity in whole biospecimens. Analytical Chemistry 85: 2927-2936, 2013.
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Before 2013
1. Orsak, T., Smith, T.L., Eckert, D., Lindsley, J.E., Borges, C.R., Rutter, J. Revealing the Allosterome: Systematic Identification of Metabolite/Protein Interactions. Biochemistry 51(1):225-32, 2012.
2. Bley, C.J., Qi, X., Rand, D.P., Borges, C.R., Nelson, R.W., Chen, J.J.L. RNA-protein binding interface in the telomerase ribonucleoprotein. PNAS 108(51): 20333-8, 2011.
3. Oran, P.E., Jarvis, J.W., Borges, C.R., Sherma, N.D., Nelson, R.W. Mass Spectrometric Immunoassay of Intact Insulin and Related Variants for Population Proteomics Studies. Proteomics Clin Appl 5: 454-9, 2011.
4. Borges, C.R., Oran, P.E., Buddi, S., Jarvis, J.W., Schaab, M.R., Rehder, D.S., Rogers, S. P., Taylor, T. and Nelson, R.W. Building Multidimensional Biomarker Views of Type 2 Diabetes Based on Protein Microheterogeneity. Clin Chem 57: 719-728, 2011.
5. Nelson, R.W., Borges, C.R. Mass spectrometric immunoassay revisited. J Am Soc Mass Spectrom 22: 960-968, 2011.
6. Rehder, D. S., Borges, C. R. Cysteine Sulfenic Acid as an Intermediate in Disulfide Bond Formation and Nonenzymatic Protein Folding. Biochemistry 49: 7748-7755, 2010.
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7. Oran, P.E., Sherma, N.D., Borges, C.R., Jarvis, J.W., Nelson, R.W. Intrapersonal and Populational Heterogeneity of the Chemokine RANTES. Clin Chem 56: 1432-1441, 2010.
8. Rehder, D. S., Borges, C. R. Possibilities and pitfalls in quantifying the extent of cysteine sulfenic acid modification of specific proteins within complex biofluids. BMC Biochemistry 11: 25, 2010.
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9. Lopez, M.F., Rezai, T., Sarracino, D.A., Prakash, A., Krastins, B., Athanas, M., Singh, R.J., Barnidge, D.R., Oran, P.E., Borges, C.R., Nelson, R.W. Selected Reaction Monitoring–Mass Spectrometric Immunoassay Responsive to Parathyroid Hormone and Related Variants. Clin Chem 56: 281-290, 2010.
10. Borges, C.R., Rehder, D.S., Jarvis, J.W., Schaab, M.S., Oran, P.E., Nelson, R.W. Full length characterization of proteins in human populations. Clin Chem 56: 202-211, 2010.
11. Oran, P.E., Jarvis, J.W., Borges, C.R., Nelson, R.W. C-peptide Microheterogeneity in Type 2 Diabetes Populations. Proteomics Clin Appl 4: 1-6, 2010.
12. Rehder, D. S., Nelson, R. W., Borges, C. R. Glycosylation status of vitamin D binding protein in cancer patients. Protein Sci 18: 2036-2042, 2009.
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13. Borges, C.R., Jarvis, J.W., Oran, P.E., Rogers, S.P., Nelson, R.W. Population Studies of Vitamin D Binding Protein Microheterogeneity by Mass Spectrometry Lead to Characterization of its Genotype Dependent O-glycosylation Patterns. J Proteom Res 7:4143-53, 2008.
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14. Borges, C.R., Jarvis, J.W., Oran, P.E., Rogers, S.P., Nelson, R.W. Population studies of intact Vitamin D binding protein by affinity capture ESI-TOF-MS J Biomolecular Techniques 19(3): 167-176, 2008.
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15. Hoggan, A.M., Shelby, M.K., Crouch, D.J., Borges, C.R., Slawson, M.H. Detection of bumetanide in an over-the-counter dietary supplement J Anal Toxicol 31(9):601-4, 2007.
16. Borges C.R., Concept for facilitating analyst-mediated interpretation of qualitative chromatographic-mass spectral data: an alternative to manual examination of extracted ion chromatograms. Anal Chem 79(13):4805-13, 2007.
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17. Borges C.R., Miller N., Shelby M., Hansen M., White C., Slawson M.H., Monti K., and Crouch D.J. Analysis of a challenging subset of World Anti-Doping Agency-banned steroids and anti-estrogens by LC/MS/MS J Anal Toxicol 31(3):125-31, 2007.
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18. Borges C.R., Taccogno J., Crouch D.J., Le L., Truong T.N. Structure and Mechanism of Formation of an Important Ion in Doping Control. Int J Mass Spectrom 247: 48-54, 2005.
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19. Borges C.R., Qi J., Wu W, Torng E., Hinck A.P., and Watson J.T. Algorithm-Assisted Elucidation of Disulfide Structure: Application of the Negative Signature Mass Algorithm to Mass‑Mapping the Disulfide Structure of the 12‑Cysteine Transforming Growth Factor β Type II Receptor Extracellular Domain. Anal Biochem 329(1):91-103, 2004.
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20. Qi, J., Hang, D., Rupp, M., Borges, C.R., Wu, W., Torng E., and Watson, J.T. Automated Data Interpretation Based on the Concept of ‘Negative Signature Mass’ for Mass-Mapping Disulfide Structures of Cystinyl Proteins. J Am Soc Mass Spectrom 14(9): 1032-1038, 2003.
21. Borges, C.R., and Watson, J.T., Recognition of Cysteine-Containing Peptides through Prompt Fragmentation of the 4-Dimethylaminophenylazophenyl-4’-maleimide Derivative During Analysis by MALDI-MS Protein Sci 12(7): 1567-72, 2003.
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22. Borges, C.R., Kuhn, D.M., and Watson, J.T. Mass Mapping Sites of Nitration in Tyrosine Hydroxylase: Random versus Selective Nitration of Three Tyrosine Residues Chem Res Toxicol 16(4): 536-40, 2003.
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23. Borges, C.R., Geddes, T., Watson, J.T., and Kuhn, D.M. Dopamine biosynthesis is regulated by S-glutathionylation: Potential mechanism of tyrosine hydroxylase inhibition during oxidative stress. J Biol Chem 277(50): 48295-302, 2002.
24. Kuhn D.M., Sadidi M., Lu X., Kriepke C., Geddes T., Borges C., Watson J.T. Peroxynitrite-induced nitration of tyrosine hydroxylase: identification of tyrosines 423, 428, and 432 as sites of modification by MALDI-TOF mass spectrometry and tyrosine-scanning mutagenesis. J Biol Chem 277(16): 14336-42, 2002.
25. Rollins, D.E., Wilkins, D.G., Krueger, G.G., Augsburger, M.P., Mizuno, A., O’neal, C., Borges, C.R., Slawson, M.H. The Effect of Hair Color on the Incorporation of Codeine into Hair. J Anal Toxicol 27: 545-551, 2003.
26. Wilkins, D.G., Mizuno, A., Borges, C.R., Slawson, M.H., and Rollins, D.E., Ofloxacin as a reference marker in hair of various colors. J Anal Toxicol 27(3): 149-55, 2003.
27. Borges, C.R., Roberts, J.C., Wilkins, D.G., and Rollins, D.E. Cocaine, Benzoylecgonine, Amphetamine, and N-acetylamphetamine Binding to Melanin Subtypes. J Anal Toxicol 27(3): 125-34, 2003.
28. Borges, C.R., Martin, S.D., Meyer, L.J., Wilkins, D.G., and Rollins, D.E. Influx and Efflux of Amphetamine and N-acetylamphetamine in Keratinocytes, Pigmented Melanocytes, and Non-Pigmented Melanocytes. J Pharm Sci 91(6): 1523-35, 2002.
29. Borges, C.R., Wilkins, D.G., and Rollins, D.E. Amphetamine and N-acetylamphetamine incorporation into hair: an investigation of the potential role of drug basicity in hair color bias. J Anal Toxicol 25: 221-227, 2001.
30. Borges, C.R., Roberts, J.C., Wilkins, D.G., and Rollins, D.E. Relationship of melanin degradation products to actual melanin content: Application to human hair. Anal Biochem 290: 116-125, 2001.
31. Denkinger, D.J., Borges, C.R., Butler, C.L., Cushman, A.M., and Kawahara, R.S. Genomic organization and regulation of the vav proto-oncogene. Biochim Biophys Acta 1491: 253-262, 2000.
32. Hold, K.M., Borges, C.R., Wilkins, D.G., Rollins, D.E., and Joseph, R.E. Jr. Detection of nandrolone, testosterone and their esters in rat and human hair samples. J Anal Toxicol 23: 416-423, 1999.